Juniata Football All-Conference Selections
All-Centennial Conference
| Year | First Team | Second Team | Honorable Mention |
| 2007 | Lance Tippett | Tyler Templeton | Andy Miller, Josh Roy |
| 2008 | Jason Marquis, Andy Miller | ||
| 2009 | Andy Miller | Jason Marquis | |
| 2010 | Jason Marquis | ||
| 2011 | Kevin Gorman, Jason Marquis | Nicholas Stubbs | |
| 2012 | Brandon Felus | Kevin Gorman, Jared Shope | Josh Gongloff |
| 2013 | Kevin Gorman, Jared Shope | Ward Udinski, Isaiah Slutter, Kyle Schuck, Josh Gongloff | Ethan Wilt |
| 2014 | Ward Udinski | Ethan Wilt, Isaiah Slutter, Frank Marin | Josh Gongloff |
| 2015 | Frank Marin, Kirby Breault | ||
| 2016 | Kirby Breault | Kyle Martell | Kevin Bonalle, Colton Craig |
| 2017 | Colton Craig | Justin Helsel | Justin Helsel, Matt Lehr |
| 2019 | Alex Flocken | Ben Lauver | |
| 2021 | Keith Caputo, Hunter Wolfley | ||
| 2022 | Quintin Stephens |
All-Mid-Atlantic Conference
| Year | First Team | Second Team | Honorable Mention |
| 1958 | Al Dungan, Bob Soloman, Ken Opipery | ||
| 1959 | Al Dungan, Hal Krause | Ron Poruban, Bill Berrier | |
| 1961 | Al Zalnasky | Bill Crowell, Grey Berrier | |
| 1962 | Grey Berrier | Ron Poruban | Bill Crowell |
| 1963 | Grey Berrier, Duane Ruble, Bill Crowell, Jim Sutton, Barry Broadwater | ||
| 1964 | Barry Broadwater | Duane Ruble, Ed Fleck | |
| 1966 | Gary Sheppard | Don Weiss, "Bo" Berlanda | |
| 1967 | Regis Schively, Jeff Powers, Rich Stoutland, Don Weiss | Dave Fleck, Joel Delewski | |
| 1968 | Cliff Berg, Dave Fleck, Don Weiss | Jeff Barnes, Jim Hartland, Pat Moore, Joel Delewski | |
| 1969 | Joel Delewski, Sal Mercadante, Pete Straup | Dan Rackovan, Dan Browne, Jeff Bassett, Dave Sparks | |
| 1970 | Mike McNeal, Bob Waggoner, Sal Mercadante, Ray Grabiak, Dan Browne, "Mo" Taylor, Dan Rackovan | "Mo" Taylor | |
| 1971 | Sal Mercadante, Larry Cerny, Dan Browne, "Mo" Taylor | ||
| 1972 | Bob Waggoner, Joe Coradetti, Karl Bergstresser | ||
| 1973 | Barry Hartley, Don Leauber, Don Myers, Sean Ryan, Rick Rudolph, Gary Shope, Mike McNeal, Lou Eckerl | Jim Messner, Steve Lehman, Jim Rescigno, Alex Zubritski | |
| 1974 | Don Page, Stu Jackson, Sean Ryan, Carmen DeFranceco, Peter Lentini | Steve Norris | |
| 1975 | Stan Nosal, Steve Lehman, Joe Weimer, Darryl Long, Stu Jackson | ||
| 1976 | Stan Nosal, Bob Devine, Jr., DeWayne Rideout, Dave Wichrowski | Dave Nichols, Ed Flynn, Joe Weimer, Stu Jackson | |
| 1977 | Larry Shepard | ||
| 1978 | Tim Reed, Steve Lach, Matt Blauch, Todd Blankenstein, Eric Bollinger, DeWayne Rideout | ||
| 1979 | Steve Lach, Larry Shepard, Eric Bollinger | DeWayne Rideout, Mike Nett, Ed Yablonski | |
| 1980 | Steve Lach, Jeff Miles | Matt Blauch | |
| 1981 | Pat Quint, Mike Nett, Tom McVay, Rick Eberly, Tom Devine, Matt Blauch, Guy Bennardo, Eric Biddle | John Widener, Kevin Morrow, Jeff Miles | |
| 1982 | Pat Quint, Dave Pfeifer, Dave Murphy, Tom McVay, Dave Hornberger | John Widener, Tim Clapper | |
| 1983 | Dave Murphy | ||
| 1984 | Gino Perri, Dave Murphy | Greg Lomax | |
| 1985 | Steve Yerger, Bob Yanckello, Gino Perri, Rich Howey | Mike Schaffner, Tom Kalinyak, Mike Culver, Bob Crossey, Mike Cottle | |
| 1986 | Steve Yerger, Mark Dorner, Bob Crossey | Tom Yeager, Bill Snyder, Jim Metz, Tom Kalinyak | |
| 1987 | Tom Yeager, Keith Watson, Jim Metz, Mike Martin, Dennis DeRenzo, Mike Cottle, Mark Dorner |
Chuck Rihn, Frank Gay, Todd Ferrara |
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| 1988 | Mike Martin, Dennis DeRenzo, Cubby Davis, Mike Cottle | Jim Metz, Tim Kirsch, Frank Gay |
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| 1989 | Todd Ferrara | John Spahr, John Sigler, Dennis DeRenzo | |
| 1990 | Brian Giachetti, Ray Shelley, Dennis DeRenzo | Bill Posavek, Mike Hogue | Jason Miller, Newt Holobinko, Smokey Glover, Matt Fulham, Steve Brunner |
| 1991 | Brian Giachetti, Matt Baker | Mike Hoque, Matt Gibson, Kevin Fayette | Rob Reeder, Bill Posavek, Newt Holobinko, Joe Kimmel, Paul Gladfelter |
| 1992 | Matt Baker | Joe Rieger, Paul Gladfelter, Toby Dick | |
| 1993 | Matt Baker | Steve Kowalski, Carlyle Glover | |
| 1994 | Chad Zaring, Tom Richards, Rob Plank, Steve Kowalski, Steve Cavanaugh | ||
| 1995 | Jon Zuck, Chad Zaring, Jason Falvo | Kyle Sweitzer, Rick Schreier, Jim Rivello, Jason Falvo, Steve Cavanaugh | |
| 1996 | Chad Zaring, Jim Rivello, Tom Richards, Aaron Hartman, Jason Falvo, Jeremy Brummett | Rick Schreier, Steve Miller, Steve Fox, Bryan Earley | |
| 1997 | Andrew Linn, Jason Falvo | Rick Schreier, Brad Hahn, Shawn Devlin, Bill Booth | |
| 1998 | Joe Montrella, Brad Hahn, Matt Eisenberg | Randy Williams, Andy Grace | |
| 1999 | Randy Williams, Jeremy Patterson, Drew Onkst, Joe Montrella, Brad Hahn, Kenny Cooper, Brandon Bateman, Matt Eisenberg | Bill Reddinger, Joe Grassi, Ray Ghaner, Matt Bowers | |
| 2000 | Ed Pfursich, Jeremy Patterson, Ray Ghaner, Matt Eisenberg, Brandon Bateman | Nate Leach, Paul Evans, Jamie Campbell, Dan Brady | |
| 2001 | Dusty Lehr, Greg Troutman | Josh Seiders, Paul Evans, Fred Taber, Nate Leach | Jeff Spotts |
| 2002 | Dusty Lehr, Craig Moshier | Fred Taber, Jason Stouffer, Scott Shacreaw, Andrew Raup, Nate Leach, Paul Evans | |
| 2003 | Craig Mosher | Jesse Leonard | |
| 2004 | Paul Evans | ||
| 2005 | Jesse Leonard | ||
| 2006 | Duane J. Ehredt, Jr. | Tyler Hall, Eric Miller |